Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020

Source: R/Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020.R

Spawner and fraction wild data. Species: Coho salmon. Method: Survey. View raw data or Download raw data

Format

A csv file.

SERIES

For certain populations, there are multiple types of spawner count data. For example survey and model counts that are based on different methods. In this case, the 'Series' column gives a name for the dataset to distinguish it from other data sets of the same population.

ESU

ESU or DPS name.

SPECIES

Species name.

METHOD

Method for the spawner count. Survey refers to a spawning ground survey; the count itself is an expansion. See the SPS (database link in sources below) for the details for the data. LadderCount is a weir or dam count. Model refers to the DABOM model that expands from PIT tag data. GSI is an expansion based on the BOXCAR model, which uses GSI to allocate fish sampled at Lower Granite Dam.

MAJOR_POPULATION_GROUP

Major population group within the ESU or DPS.

NMFS_POPID

NWFSC id for the population.

POPULATION_NAME

Long population name.

COMMON_POPULATION_NAME

Shorter population name used in Viability Report figures and tables.

RUN_TIMING

Run timing (fall, winter, spring, etc). If missing, see the ESU/DPS name or may not be applicable for the species.

YEAR

Integer in XXXX format. The year that the count was made. See details for ESU or DPS specific comments.

NUMBER_OF_SPAWNERS

Total spawners or escapement count. -99 means missing count. May be integer or decimal.

FRACWILD

Decimal between 0 and 1. Fraction wild or natural. -99 means missing information.

CONTRIBUTOR

Data contributor. Listed under Source below.

COMPILER

NWFSC staff who compiled the data file: Mari Williams

CITATION

Data citation. Listed under References below.

Source

  • Grays and Chinook Rivers - late Coho salmon: Washington Department of Fish and Wildlife

  • Youngs Bay: Oregon Department of Fish and Wildlife

  • Big Creek: Oregon Department of Fish and Wildlife

  • Elochoman River - late Coho salmon: Washington Department of Fish and Wildlife

  • Clatskanie River: Washington Department of Fish and Wildlife

  • Mill, Abernathy, and Germany Creeks - late Coho salmon: Washington Department of Fish and Wildlife

  • Scappoose River: Oregon Department of Fish and Wildlife

  • Lower Cowlitz River - late Coho salmon: Washington Department of Fish and Wildlife

  • Coweeman River - late Coho salmon: Washington Department of Fish and Wildlife

  • North Fork Toutle Coho: Washington Department of Fish and Wildlife

  • South Fork Toutle Coho: Washington Department of Fish and Wildlife

  • Upper Cowlitz and Cispus Coho: Washington Department of Fish and Wildlife

  • Tilton Coho: Washington Department of Fish and Wildlife

  • Kalama River - late Coho salmon: Washington Department of Fish and Wildlife

  • North Fork Lewis Coho: Washington Department of Fish and Wildlife

  • East Fork Lewis Coho: Washington Department of Fish and Wildlife

  • Salmon Creek - late Coho salmon: Washington Department of Fish and Wildlife

  • Clackamas River: Oregon Department of Fish and Wildlife

  • Sandy River: Oregon Department of Fish and Wildlife

  • Washougal River - late Coho salmon: Washington Department of Fish and Wildlife

  • Upper Gorge (Columbia) Coho: Washington Department of Fish and Wildlife

  • Hood River: Oregon Department of Fish and Wildlife

References

Ford, M.J., et al. 2022. Biological Viability Assessment Update for Pacific Salmon and Steelhead Listed Under the Endangered Species Act: Pacific Northwest. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-171. https://doi.org/10.25923/kq2n-ke70

Salmon Population Summaries (SPS) Database: https://www.fisheries.noaa.gov/resource/tool-app/salmon-population-summaries-sps

Original source:

  • Grays and Chinook Rivers - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Youngs Bay: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2019). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

  • Big Creek: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

  • Elochoman River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Clatskanie River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Mill, Abernathy, and Germany Creeks - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Scappoose River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

  • Lower Cowlitz River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Coweeman River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • North Fork Toutle Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • South Fork Toutle Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Upper Cowlitz and Cispus Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (1996-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Tilton Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (1996-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Kalama River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • North Fork Lewis Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • East Fork Lewis Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Salmon Creek - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Clackamas River: Columbia River Coho Natural Origin Spawner Abundance Dataset (1974-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

  • Sandy River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

  • Washougal River - late Coho salmon: Columbia River Coho Natural Origin Spawner Abundance Dataset (2010-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Upper Gorge (Columbia) Coho: Columbia River Coho Natural Origin Spawner Abundance Dataset (2007-2018). Spawner abundance data. Washington Department of Fish and Wildlife. Protocol and Methods available at https://fortress.wa.gov/dfw/score/score/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/OAI.

  • Hood River: Columbia River Coho Natural Origin Spawner Abundance Dataset (2002-2018). Spawner abundance data. Oregon Department of Fish and Wildlife. Protocol and Methods available at http://odfwrecoverytracker.org/metadata/. Accessed from www.cax.streamnet.org vers May 26 2020 10:00PM by Mari Williams, NOAAF NWFSC/PSMFC.

Examples

data('Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020')
library(ggplot2)
out$NUMBER_OF_SPAWNERS[out$NUMBER_OF_SPAWNERS==-99] <- NA
ggplot(out, aes(x=YEAR, y=NUMBER_OF_SPAWNERS)) + 
  geom_point(na.rm = TRUE) +
  ggtitle('Salmon-coho-Lower-Columbia-River-ESU-LCcoho2020') +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))


out$FRACWILD[out$FRACWILD == -99] <- NA
ggplot(out, aes(x=YEAR, y=FRACWILD)) +
  geom_point(na.rm = TRUE) +
  ggtitle('Fraction Wild') +
  ylim(0,1) +
  facet_wrap(~COMMON_POPULATION_NAME) +
  theme(axis.text.x = element_text(angle = 45, vjust = 1, hjust=1), 
   strip.text.x = element_text(size = 6))