NWCTrends options and plot variables

Source: R/nwctrends_options.R

Set up the plot default line widths, types and colors. Pass in as a list, such as nwctrends.options = list(main.raw.pch = 1) with the variables that you wish to set. See details for the names and descriptions of the variables.

Value

Nothing is returned. The variables are set in the internal package environment.

Details

main. variables for the main plot with trends for each ESU

  • main.title.cex Size of the main ESU titles in the plot. Default is 1.5.

  • main.poptitle.cex Size of the population titles in the individual panels. Default is 1.

  • main.ylabel.cex Size of the y axis labels in the individual panels. Default is 0.8.

  • main.total.lty Line type for the smoothed total spawners line. Default is 1 (solid).

  • main.total.lwd Line width for the smoothed total spawners line. Default is 3 (thick).

  • main.total.col Line color for the smoothed total spawners line. Default is black.

  • main.wild.lty Line type for the smoothed wild spawners line. Default is 1 (solid).

  • main.wild.lwd Line width for the smoothed wild spawners line. Default is 1 (thin).

  • main.wild.col Line color for the smoothed wild spawners line. Default is red (#D44045) from the NMFS palette.

  • main.raw.pch Point type for the raw spawners data points. Default is 19 (solid circle).

  • main.raw.col Color for the raw spawners data points. Default is blue (#00467F) from the NMFS palette.

  • main.ci.col Color for the confidence polygon around the smoothed total spawners line. Default is "grey75".

  • main.ci.border Border for the confidence polygon around the smoothed total spawners line. Default is NA which is no border. See polygon() for the options.

  • main.NAtotal.lty Line type for the smoothed total spawners line before the first data points. Default is 1 (solid).

  • main.NAtotal.lwd Line width for the smoothed total spawners line before the first data points. Default is 3 (thick).

  • main.NAtotal.col Line color for the smoothed total spawners line before the first data points. Default is "grey".

  • main.NAci.col Color for the confidence polygon around the smoothed total spawners line before the first data points. Default is "grey95".

  • main.NAci.border Border for the confidence polygon around the smoothed total spawners line before the first data points. Default is NA which is no border. See polygon() for the options.

fracwild. variables for the fracwild plot

  • fracwild.title.cex Size of the main ESU titles in the plot. Default is 1.5.

  • fracwild.poptitle.cex Size of the population titles in the individual panels. Default is 1.

  • fracwild.ylabel.cex Size of the y axis labels in the individual panels. Default is 0.8.

  • fracwild.lty Line type for the smoothed fracwild line. Default is 1 (solid).

  • fracwild.lwd Line width for the smoothed fracwild line. Default is 2 (medium thick).

  • fracwild.col Line color for the smoothed fracwild line. Default is blue (#00467F) from the NMFS palette.

  • fracwild.raw.pch Point type for the fracwild raw data points. Default is 1 (open circle).

  • fracwild.raw.col Color for the fracwild raw data points. Default is black.

prod. variables for the productivity plot

  • prod.title.cex Size of the main ESU titles in the plot. Default is 1.5.

  • prod.poptitle.cex Size of the population titles in the individual panels. Default is 1.

  • prod.ylabel.cex Size of the y axis labels in the individual panels. Default is 0.8.

  • prod.col.neg Color of the negative productivity bars. Default is red (#D44045) from the NMFS palette.

  • prod.col.pos Color of the positive productivity bars. Default is green (#007934) from the NMFS palette.

geomean. variables for the geomeans plot

  • geomean.title.cex Size of the main titles in the plot. Default is 1.

  • geomean.xaxis.cex Size of the x axis tick labels in the individual panels. Default is 0.9.

  • geomean.yaxis.cex Size of the y axis tick labels in the individual panels. Default is 0.9.

  • geomean.pch Point type for the data points. Default is 19 (solid circle).

  • geomean.cex Point size for the data points. Default is 1.5.

  • geomean.col.neg Color of the negative data points. Default is red (#D44045) from the NMFS palette.

  • geomean.col.pos Color of the positive data points. Default is black.

  • geomean.abline.lty Line type for the horizontal reference lines. Default is 2 (dashed).

  • geomean.abline.col Line color for the horizontal reference lines. Default is "grey".

trend. variables for the trends plot showing the x-year (e.g. 15-year) trend values in a plot

  • trend.title.cex Size of the main title in the plot. Default is 1.

  • trend.ylabel.cex Size of the y axis label. Default is 1.

  • trend.axis.cex Size of the axis tick labels. Default is 1.

  • trend.pch Point type for the data points. Default is 19 (solid circle).

  • trend.cex Point size for the data points. Default is 1.5.

  • trend.col.neg Color of the negative data points. Default is red (#D44045) from the NMFS palette.

  • trend.col.pos Color of the positive data points. Default is black.

See also

NWCTrends_report()

Author

Eli Holmes, NOAA, Seattle, USA. eli(dot)holmes(at)noaa(dot)gov