Package overview

NWCTrends-package

NWFSC PNW Salmonid Viability Report Standardized Metrics

Main report writing functions

These are the functions that prepare the data, tables, figures and csv files.

NWCTrends_report()

NWFSC PNW Salmonid Viability Report Table and Figures

Status_trendfigure_multipanel()

Main figure of estimated trends (wild and total spawners)

Status_trendfigure_multipanel_csv()

data frame of estimated trends (wild and total spawners)

data_setup()

Read in the inputfile

fracwild_multipanel()

Figure of the raw and smoothed fracwild estimates.

fracwild_table()

Make average and geomean fraction wild tables

geomean_table()

Create the geomean tables

productivity_plot()

Productivity plot

trend_15_table()

Create the trend tables

trend_fits()

Fit a MARSS model and store in a list

Utility

Utility functions

choose.esu()

Choose ESU

clean.mpg()

Lighter clean up population names

clean.pops()

Clean up population names

nwctrends.options

NWCTrends options and plot variables