Package overview |
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NWFSC PNW Salmonid Viability Report Standardized Metrics |
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Main report writing functionsThese are the functions that prepare the data, tables, figures and csv files. |
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NWFSC PNW Salmonid Viability Report Table and Figures |
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Main figure of estimated trends (wild and total spawners) |
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data frame of estimated trends (wild and total spawners) |
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Read in the inputfile |
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Figure of the raw and smoothed fracwild estimates. |
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Make average and geomean fraction wild tables |
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Create the geomean tables |
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Productivity plot |
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Create the trend tables |
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Fit a MARSS model and store in a list |
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UtilityUtility functions |
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Choose ESU |
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Lighter clean up population names |
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Clean up population names |
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NWCTrends options and plot variables |
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